Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs9652091 | chr13:28073509 | G/A | 6.42E-7 | 175 | 15.27 | 17 | 3.5 | KM Plot |
| PAAD | rs9652092 | chr13:28074855 | T/C | 5.27E-7 | 175 | 15.2 | 17.4 | 3.5 | KM Plot |
| PAAD | rs9660532 | chr1:227515679 | A/G | 3.22E-5 | 178 | 3.9 | 15.43 | 15.55 | KM Plot |
| PAAD | rs9726307 | chr1:216295620 | A/T | 0 | 174 | 14.47 | 17.4 | 0.4 | KM Plot |
| PAAD | rs9738614 | chr12:104737448 | G/A | 1.1E-12 | 176 | 1.37 | 15.57 | 15.48 | KM Plot |
| PAAD | rs9739826 | chr12:104737405 | A/C | 9.67E-13 | 177 | 1.37 | 15.8 | 15.48 | KM Plot |
| PAAD | rs9739833 | chr12:104737430 | A/T | 1.1E-12 | 176 | 1.37 | 15.57 | 15.48 | KM Plot |
| PAAD | rs974698 | chr1:24132785 | C/T | 4.55E-5 | 173 | 12.92 | 13.13 | 16.92 | KM Plot |
| PAAD | rs9753484 | chr2:70420617 | T/A | 0 | 170 | 15.43 | 19.78 | 1.03 | KM Plot |
| PAAD | rs9765884 | chr6:44861900 | G/T | 0.000153 | 177 | 11.77 | 17.03 | 15.53 | KM Plot |
| PAAD | rs9795271 | chr11:125582375 | C/T | 0.00011 | 174 | 16.08 | 14 | 5.03 | KM Plot |
| PAAD | rs9795280 | chr11:125583008 | G/A | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs9795427 | chr11:125581800 | T/C | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs9795472 | chr11:125582340 | T/A | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs9828961 | chr3:197126185 | G/A | 5.82E-7 | 176 | 15.57 | 15.43 | 1.78 | KM Plot |